A. Zemla, B. Geisbrecht, J. Smith, M. Lam, B. Kirkpatrick, M. Wagner, T. Slezak, C.E. Zhou.
"STRALCP structure alignment-based clustering of proteins",
Nucleic Acids Research, 2007, Vol. 35, No. 22, Pp. e150; doi: 10.1093/nar/gkm1049
This form allows the submission of the list of protein structures from PDB for STRALCP analysis.
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Your data will be processed and you will be notified when the results of STRALCP analysis are completed.
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(Optional) name of the experiment.
The name of the experiment (will be used in the subject line in the e-mail to inform you after the calculations are completed):
Parameters for STRALCP calculations:
Additional LGA parameters (experts only):
COPY AND PASTE
your PDB list of models (chains, domains) into the box below (no more than 25 PDB entries; one chain specification per line):
Please make sure that you select PDB chains (and domain ranges) correctly.
Otherwise NO RESULTS will be calculated.
PDB_entry has to be in the following format:
1cpi_A for PDB entry: 1cpi, chain: 'A'
1akf for PDB entry: 1akf, chain: ' '
or specifying NMR MODEL:
1bve_B_5 for PDB entry: 1bve, chain: 'B', model: 5
1rel___4 for PDB entry: 1rel, chain: ' ', model: 4
It is recommended that the structures are split into separate domains.
For details how to specify ranges in calculated structures please check EXAMPLE and LGA parameters.
file containing set of protein structures for processing (name of your local *.tar.gz file)
NOTE: NO subdirectories within *.tar.gz file!